UPR – Physiologie, Pathologie et Génétique Végétales (PPGV)

Publications

HOU S., RODRIGUES O., LIU Z., SHAN L., & HE, P. (2023). Small Holes, Big Impact: Stomata in Plant-Pathogen-Climate Epic Trifecta. Molecular plant, S1674-2052(23)00394-5. Advance online publication. https://doi.org/10.1016/j.molp.2023.11.011

LIBOUREL C.*, KELLER* J., BRICHET L. et al. (2023) Comparative phylotranscriptomics reveals ancestral and derived root nodule symbiosis programmes. Nature Plants 9, 1067–1080. https://doi.org/10.1038/s41477-023-01441-w

GEFFROY, O., LAFORGE, J., DENAT, M., VOLMERANGE, L., & PETER, M. (2023). Are peppery notes the main spoiler of liking for young consumers in a Duras red wine made from a cool and wet season? OENO One, In press.

GEFFROY, O., AYMARD, F., CUIF, C., BAERENZUNG DIT BARON, T., DENAT, M., & JACQUES, A. (2023). Olfactory threshold for rotundone in brandy is 10-fold higher than in wine and do not significantly increase with the complexity of the matrix. South African Journal of Viticulture and Enology, In press

NOUGARÈDE, S., DIOT, A., MAZA, E., SAMSON, A., OLIVIER-SALVAGNAC, V., CAILLÉ, S., GEFFROY, O., & CHERVIN, C. (2023). Comparison of Check-All-That-Apply and Adapted-Pivot-Test methods for wine sensory characterization with a panel of untrained students. Journal of Sensory Studies, e12862.

CHERVIN, C. & GEFFROY, O. (2023). Ethylene impact on grapevine pistil temperature and fruit set. Journal of Plant Growth Regulation, 42, 5433–5437.

Thèses

AL SARRAJ M., 2023. Microbiome du bois de vigne : Influences génétiques et environnementales Rôle dans les défenses précoces à l’esca. Thèse de Doctorat de l’Université des Toulouse – INP Toulouse.

BAERENZUNG DIT BARON T., 2023. Étude de sesquiterpénoïdes d’intérêt chez la vigne : analyse par SIFT-MS et impact de facteurs génotypiques et abiotiques sur la biosynthèse et l’accumulation de la rotundone. Thèse de Doctorat de l’Université des Toulouse – INP Toulouse.

Publications

BEAULIEU, A., GIRAUD, V., MAGRO, P., NOUGAREDE, S., MAZA, E., SAMSON, A., GEFFROY, O., & CHERVIN, C. (2022). Development of the adapted pivot test method for descriptive sensory analyses with young untrained students. Journal of Sensory Studies, e12779. HTTPS://DOI.ORG/10.1111/JOSS.12779

BAERENZUNG DIT BARON, T. B., YOBRÉGAT, O., JACQUES, A., SIMON, V., & GEFFROY, O. (2022). A novel approach to discriminate the volatilome of Vitis vinifera berries by selected ion flow tube mass spectrometry analysis and chemometrics. Food Research International, 111434.

Chervin J., Romeo-Oliván A., Fournier S., Puech-Pages V., Dumas B., Jacques A., Marti G. 2022. Modification of early response of Vitis vinifera to pathogens relating to Esca disease and Biocontrol agent Vintec® revealed by untargeted metabolomics on woody tissues. Frontiers in Microbiology. 13: 234. https://doi.org/10.3389/fmicb.2022.835463

GEFFROY, O., PASQUIER, G., PAGES, M., & VIOLLEAU, F. (2022). Exploring the appreciation of a new range of ethanol reduction in Chardonnay and Syrah wines using a consumer rejection threshold approach. Oeno one, 56(4), 139-146

GEFFROY, O., BAERENZUNG DIT BARONA, T., YOBRÉGAT, O., DENAT, M. SIMON, V., & JACQUES, A. (2022). The SIFT-MS fingerprint of Vitis vinifera l. cv. Syrah berries is stable over the second part of maturation under warm conditions of climate. Oeno one, 56(4), 147-155

LIU Z., HOU S., RODRIGUES O., WANG P., LUO D., MUNEMASA S., LEI J., LIU J., ORTIZ-MOREA F. A., WANG X., NOMURA K., YIN C., WANG H., ZHANG W., ZHU-SALZMAN K., HE S. Y., HE P., & SHAN L. 2022. Phytocytokine signalling reopens stomata in plant immunity and water loss. Nature, 605(7909), 332–339. https://doi.org/10.1038/s41586-022-04684-3

RODRIGUES O., & SHAN L. 2022. Stomata in a state of emergency: H₂O₂ is the target locked. Trends in plant science, 27(3), 274–286. https://doi.org/10.1016/j.tplants.2021.10.002

Romeo-Oliván A., Chervin J., Breton C., Lagravère T., Daydé J., Dumas B. and Jacques A. 2022. Comparative transcriptomics suggests early modifications on hormonal signaling and secondary metabolism biosynthesis in response to Phaeomoniella chlamydospora and Phaeoacremonium minimum by the presence of Trichoderma atroviride SC1 in grapevine trunk. Frontiers in Microbiology. 13, 5.   https://doi.org/10.3389/fmicb.2022.898356

Thèses

ROMEO-OLIVAN A., 2022. Evaluation transcriptomique et métabolomique de la réponse du bois de vigne aux agents phytopathogènes de l’esca. Thèse de Doctorat de l’Université des Toulouse – INP Toulouse.

Publications

BABILONIA K., WANG P., LIU Z., JAMIESON P., MORMILE B., RODRIGUES O., ZHANG L., LIN W., DANMAIGONA CLEMENT C., MENEZES DE MOURA S., ALVES-FERREIRA M., FINLAYSON S. A., LORING NICHOLS R., WHEELER T. A., DEVER J. K., SHAN L., & HE P. 2021. A nonproteinaceous Fusarium cell wall extract triggers receptor-like protein-dependent immune responses in Arabidopsis and cotton. The New phytologist, 230(1), 275–289. https://doi.org/10.1111/nph.17146

PASCOTTO, K., LERICHE, C., CAILLÉ, S., VIOLLEAU, F., BOULET, J. C., GEFFROY, O., Levasseur-Garcia, C., & Cheynier, V. (2021). Study of the relationship between red wine colloidal fraction and astringency by asymmetrical flow field-flow fractionation coupled with multi-detection. Food Chemistry, 361, 30104.

PASQUIER, G., FEILHES, C., DUFOURCQ, T., & GEFFROY, O. (2021). Potential contribution of climate change to the protein haze of white wines from the French southwest region. Foods, 10(6), 1355.

Romeo-Oliván A., Pagès-Homs M., Breton C., Lagarde F., Cros H., Yobrégat O., Violleau F. and Jacques A. 2021. Ozone dissolved in water: an innovative tool for the production of young plants in grapevine nurseries? Ozone: Science and Engineering. 44, 6, 521:535. https://doi.org/10.1080/01919512.2021.1984203

Publications

Petit E., Berger M., Camborde L., Vallejo V., Daydé J., Jacques A. 2020 Development of screening methods for functional characterization of UGTs from Stevia rebaudiana. Scientific Reports :10, 15137.

Geffroy O., Kleiber D., Jacques A. 2020 May peppery wines be the spice of life? A review of research on the ‘pepper’ aroma and the sesquiterpenoid rotundone. OENO One, 54(2):245-262.

Geffroy, O., Armario, M., Fontaine, A., Fourure, M., Pasquier, G., Semadeni, T., & Chervin, C. 2020. 3-Isobutyl-2-methoxypyrazine is neutrally perceived by consumers at usual concentrations in French Sauvignon and Fer wines from the Gaillac area. OENO One, 54(4):1133-1142.

van Leeuwen, C., Barbe, J.C., Darriet, P., Geffroy, O., Gomès, E., Guillaumie, S.,& Thibon, C. 2020. Recent advancements in understanding the terroir effect on aromas in grapes and wines: This article is published in cooperation with the XIIIth International Terroir Congress November 17-18 2020, Adelaide, Australia. Guest editors: Cassandra Collins and Roberta De Bei. OENO One:54(4):985-1006.

Geffroy, O., Morère, M., Lopez, R, Pasquier, G., & Condoret, J.S. 2020. investigating the Aroma of Syrah Wines from the Northern Rhone Valley Using Supercritical CO2-Dearomatized Wine as a Matrix for Reconstitution Studies. Journal of Agricultural and Food Chemistry, 68(41):11512-11523.

Pascotto, K., Cheynier, V, Williams, P., Geffroy, O., & Violleau, F. 2020. Fractionation and characterization of polyphenolic compounds and macromolecules in red wine by asymmetrical flow field-flow fractionation. Journal of Chromatography A, 1629, 461464.

Pages M., Kleiber D., Violleau F, 2020. Ozonation of three different fungal conidia associated with apple disease: Importance of spore surface and membrane phospholipid oxidation. Food sciences and nutrition, 8:5292-5297.

Canado, A., Tournois M., Pages M.,  Roustan M., Remus-Borel W., Dietrich N., Violleau F., Hebrard G., 2020. The sudden decrease of the dissolved ozone concentration in sprays: a mass transfer phenomenon ? Industrial & Engineering  Chemistry Research, 59, 33 :14914–14924.

Catala A., Levasseur-Garcia C., Pages M., Schaff J.-L., Till U., Vitolla Pasetto L.,  Hausberger M., Cousillas H.,  Violleau F., Grandgeorge M., 2020. Prediction and detection of human epileptic seizures baded on SIFT-MS chemometric data. Scientific Reports, 10:18365

Geffroy, O., Borau, C., Calas, A., Médeville, C., Monniot, P., Pasquier, G., Grenier, L., Ferrer, M. de Roany, J. 2020. Appréciation et profils de consommation des vins doux et des vins fortifiés: Une étude à l’échelle de l’offre française. Revue des oenologues et des techniques vitivinicoles et oenologiques, 47(175), 42-47.

Geffroy O., Kleiber D., Jacques A. 2020 Key facts about rotundone and practical ways to pepper your wine with this fascinating aroma compound. IVES technical review Vine & wine (technical article in 6 languages) DOI: https://doi.org/10.20870/IVES-TR.2020.4483.

Thèses

BEGHIN R., 2020. Etude des conséquences de la digestion anaérobie du maïs sur ses caractéristiques amendantes : devenir des matières organiques, stockage du carbone, vie microbienne, capacité d’adsorption et stabilité structurale de l’horizon de surface de Luvisols cultivés. Thèse de Doctorat de l’Université des Toulouse – INP Toulouse.

GEFFROY O., 2020. Arômes poivrés des vins et rotundone : aspect sensoriel, appréciation par le consommateur, impact des facteurs environnementaux, viticoles, et des techniques de vinification. Thèse de Doctorat en Développement des Plantes de l’Université des Toulouse – INP Toulouse.

SEGRET L., 2020. Optimisation de la teneur en principes actifs par des facteurs culturaux dans des plants de P. ginseng Effet du stress lumineux et de la fertilisation sur la teneur en ginsénosides des racines de P. ginseng. Thèse de Doctorat l’Université des Toulouse – INP Toulouse.

TREGUIER S., 2020 La spectroscopie comme outil de caractérisation des microorganismes : application à la microbiologie du sol et des produits laitiers. Thèse de Doctorat l’Université des Toulouse – INP Toulouse.

Publications

REIS P., PIERRON R.J.G., LARIGNON P., LECOMTE P., ABOU-MANSOUR E., FARINE S., BERTSCH C., JACQUES A., TROTEL-AZIZ P., REGO C., FONTAINE F. 2019 Vitis Methods to understand and develop strategies for diagnosis and sustainable control of Grapevine Trunk Diseases. Phytopathology, 109:916-931.

PETIT E., JACQUES A., DAYDÉ J., VALLEJO V., BERGER M. 2019 UGT76G1 polymorphism in Stevia rebaudiana: New variants for steviol glycosides conjugation. Plant Physiology and Biochemistry, 135:563-569.

DEPOTTER J.R.L., SHI-KUNNE X., MISSONNIER H., LIU T., FAINO L., VAN DEN BERG G.C.M., WOOD T.A., ZHANG B., JACQUES A., M.F., THOMMA B.P.H.J. 2019 Dynamic virulence-related regions of the plant pathogenic fungus Verticillium dahliae display enhanced sequence conservation. Molecular Ecology, 18(15):3482-3495.

BEGHIN-TANNEAU R., GUERIN F., GUIRESSE M., KLEIBER D., SCHEINER J.D. 2019. Carbon sequestration in soil amended with anaerobic digested matter. Soil and Tillage Research 192:87–94.

GEFFROY, O., LI CALZI, M., IBFELT, K., YOBRÉGAT,O., FEILHÈS, C., & DUFOURCQ, T. (2019) Using common viticultural practices to modulate the rotundone and 3-isobutyl-2-methoxypyrazine composition of Vitis vinifera L. cv. Fer N red wines from a temperate climate wine region with very cool nights. OENO One 54, 581-595

GEFFROY, O., DESCÔTES, J., LEVASSEUR-GARCIA, C., DEBORD, C. & DUFOURCQ, T. (2019) A two-year multisite study of viticultural and environmental factors affecting rotundone levels in Duras red wine. OENO One 53, 457-470.

Thèses

PETIT E., 2019. Identification et caractérisation d’UGTs clés impliquées dans la biosynthèse des glycosides de stéviol chez Stevia rebaudiana. Thèse de Doctorat de l’Université des Toulouse – INP Toulouse.

Publications

DUTHEN, S, ROCHAT, C., KLEIBER, D. ; VIOLLEAU F., DAYDÉ, J., RAYNAUD, C., LEVASSEUR-GARCIA, C 2018 Physicochemical characterization and study of molar mass of industrial gelatins by AsFlFFF-UV/MALS and chemometric approach. PLoS One 13(10):e0203595 DOI: 10.1371/journal.pone.0203595

GEFFROY O.,DESCOTES J., SERRANO E.,LI CALZI M., DAGAN L., SCHNEIDER R., 2018 Can a certain concentration of rotundone be undesirable in Duras red wine ? A study to estimate a consumer rejection threshold for the pepper aroma compound. Australian Journal of Grape and Wine Research Volume: 24 Issue: 1 Pages: 88-95 DOI : 10.1111/ajgw.12299

GEFFROY O., LOPEZ R; FEILHES C., VIOLLEAU F., KLEIBER D., FAVAREL JL., FERREIRA V. 2018 Modulating analytical characteristics of thermovinified Carignan musts and the volatile composition of the resulting wines through the heating temperature. Food chemistry 25:7-14 DOI : 10.1016/j.foodchem.2018.02.153

Thèses

DUTHEN S., 2018. Etude de la caractérisation de matières collagéniques par spectroscopie proche infrarouge. Mise au point et développement d’un système d’analyse en mode dynamique pour l’industrie de la gélatine. Thèse de Doctorat de l’Université de Toulouse – INP Toulouse.

Publications

DUHNEN A., GRAS A., TEYSSEDRE S., ROMESTANT M., CLAUSTRES B., DAYDE J., AND MANGIN B. 2017 Genomic Selection for Yield and Seed Protein Content in Soybean: A Study of Breeding Program Data and Assessment of Prediction Accuracy Published in Crop Sci. 57:1–13 doi: 10.2135/cropsci2016.06.0496

GEFFROY, O., SIEBERT, T., SILVANO, A., & HERDERICH, M. (2017) Impact of winemaking techniques on classical enological parameters and rotundone in red wine at the laboratory scale. American Journal of Enology and Viticulture 68, 141-146.

MIRLEAU-THEBAUD V., DAYDE J., SCHEINER JD., 2017 The influence of soil compaction and conservation tillage on sunflower’s (Helianthus annuus L.) below ground system (Influencia de la compactacion del suelo y laboreo de conservacion en el sistema radical de Helianthus annuus L.) FYTON ISSN 0031 9457 (2017) 86: 53-67

MIRLEAU-THEBAUD V., DAYDE J., SCHEINER JD., 2017 Growth kinetics at early stages of sunflower (Helianthus annuus L.) under soil compaction Journal of Plant Nutrition ISSN: 0190-4167 (Print) 1532-4087 (Online) Journal homepage:

MISSONNIER H., JACQUES A., BANG J., DAYDE J., AND MIRLEAU-THEBAUD V., 2017. Accounting for biotic spatial variability in fields: Case of resistance screening against sunflower Verticillium wilt. PloS one, 12(8), e0181050.

POUZOULET J., ROLSHAUSEN P.E., SCHIAVON M., BOL S., TRAVADON R., LAWRENCE D.P., BAUMGARTNER K., ASHWORTH V.E., COMONT G., CORIO-COSTET M.-F., PIERRON R.J.G., BESSON X. AND JACQUES A. 2017. A method to detect and quantify Eutypa lata and Diplodia seriata–complex dna in grapevine pruning wounds. Plant disease, 101:1470-1480.

Thèses

DUHNEN A., 2017. Insertion de la sélection génomique dans un processus de sélection variétale : application à un oléoprotéagineux, le soja, Thèse de Doctorat, Université de Toulouse

MISSONNIER H., 2017. Interactions entre le tournesol cultivé (Helanthus annuus L.) et les pathogènes associés à la verticilliose : développement d’un modèle d’étude adapté à la sélection variétale, Thèse de Doctorat, Université de Toulouse

HDR

JACQUES A., 2017 Les interactions plante-microorganisme(s) : Vers la compréhension d’un “modèle esca” chez la vigne (HDR)

Publications

FISCHER J., COMPANT S., PIERRON R.J.G., JACQUES A., THINES E. AND BERGER H., 2016 Differing alterations of Two Esca associated Fungi, Phaeoacremonium aleophilum and Phaeomoniella chlamydospora on Transcriptomic Level, to Co-cultured Vitis vinifera Calli. PLoS ONE 11(9): e0163344. doi:10.1371/journal.pone.0163344.

GHANNAM A., JACQUES A., DE RUFFRAY P. AND KAUFFMANN S., 2016 NtRING1, putative RING-finger E3 ligase protein, is a positive regulator of the early stages of elicitin-induced HR in tobacco. Plant Cell Rep 35(2):415-28. doi: 10.1007/s00299-015-1893-7.

PIERRON R.J.G., POUZOULET J., COUDERC C., JUDIC E., COMPANT S. AND JACQUES A., 2016 Variations in early response of grapevine wood depending on wound and inoculation combinations with Phaeoacremonium aleophilum and Phaeomoniella chlamydospora. Frontiers in Plant Science 7:268. doi: 10.3389/fpls.2016.00268.

PIERRON R.J.G., POUZOULET J., MEZIANE A., MAILHAC N. AND JACQUES A., 2016 A model for biological control studies of grapevine trunk diseases under laboratory conditions, in [Recent advances on biocontrol of grapevine diseases: from fundamental knowledge to application in the vineyards] Eds CABI; pp171-181.

GEFFROY, O., SIEBERT, T., HERDERICH, M., MILLE, B., & SERRANO, E. (2016) On-vine grape drying combined with irrigation allows to produce red wines with enhanced phenolic and rotundone concentrations, Scientia Horticulturae 207, 208-217.

GEFFROY, O., BUISSIÈRE, C., LEMPEREUR, V., & CHATELET, B. (2016) A sensory, chemical and consumer study of the peppery typicality of French gamay wines from cool-climate vineyards. OENO One 50, 35-47.

HDR

KLEIBER D., 2016 Prédiction de la qualité technologique et sanitaire des productions végétales, Mémoire d’Habilitation à Diriger des Recherches, INPT, Toulouse (HDR)

Publications

BARBET-MASSIN C., GIULIANO S., ALLETTO L., DAYDÉ J., BERGER M., 2015. Nitrogen Limitation Alters Biomass Production but Enhances Steviol Glycoside Concentration in Stevia rebaudiana Bertoni. PLoS One, 10(7): e0133067. DOI: 10.1371/journal.pone.0133067. Accepted June 22, 2015.

BARBET-MASSIN C., GIULIANO S., ALLETTO L., DAYDÉ J., BERGER M., 2015. Towards a semi-perennial culture of Stevia rebaudiana under temperate climate: effects of genotype, environment and plant age on steviol glycoside content and composition. Genetic Resources and Crop Evolution, DOI: 10.1007/s10722-015-0276-9. Accepted June 2, 2015.

HUBERT J., BORIE N., CHOLLET S., PERRET J., BARBET-MASSIN C., BERGER M., DAYDE J., RENAULT J.H., 2015. Intensified Separation of Steviol Glycosides from a Crude Aqueous Extract of Stevia rebaudiana Leaves Using Centrifugal Partition Chromatography. Planta Medica, 81: 1-7. DOI: http://dx.doi.org/10.1055/s-0035-1545840. Accepted February 9, 2015.

Levasseur-Garcia C., Bailly S., KLEIBER D., BAILLY J.D., 2015. Assessing Risk of Fumonisin Contamination in Maize Using Near-Infrared Spectroscopy. Journal of Chemistry, ID 485864, 10 p., doi:10.1155/2015/485864.

Levasseur-Garcia C., KLEIBER D., 2015. A method for the allotment of maize contaminated by toxins. Journal of Near Infrared Spectroscopy, 23: 255-265.

PAGES M., KLEIBER D., PIERRON R. J. G. & VIOLLEAU F. 2015 Ozone effects on Botrytis cinerea conidia using a bubble column: germination inactivation and membrane phospholipids oxidation. Ozone: Science & Engineering, 38(1), 62-69.

PIERRON R.J.G., GORFER M., BERGER H., JACQUES A., SESSITSCH A., STRAUSS J. AND COMPANT S. Deciphering the niches of colonisation of Vitis vinifera L. by the esca-associated fungus Phaeoacremonium aleophilum using a gfp marked strain and cutting systems. PLoS ONE, 10(6): e0126851. doi:10.1371/journal.pone.0126851.

PIERRON R.J.G., PAGES M., COUDERC C., COMPANT S., JACQUES A. AND VIOLLEAU F., 2015. In vitro and in planta fungicide properties of ozonated water against the esca-associated fungi Phaeoacremonium aleophilum. Scientia Horticulturae, 189: 184-191.

GEFFROY, O., LOPEZ, R., SERRANO, E., DUFOURCQ, T., GRACIA-MORENO, E., CACHO, J., & FERREIRA, V. (2015). Changes in analytical and volatile compositions of red wines induced by pre-fermentation heat treatment of grapes. Food Chemistry, 187, 243-253.

GEFFROY, O., YOBRÉGAT, O., DUFOURCQ, T., SIEBERT, T., & SERRANO, E. (2015) Certified clone and powdery mildew impact rotundone in red wine from Vitis vinifera L. cv. Duras N. OENO One 49, 231-240.

Thèses

BARBET-MASSIN C., 2015. Sélectionner et cultiver Stevia rebaudiana Bertoni en milieu tempéré : exploration de la variabilité de la teneur et de la composition en glycosides de steviol. Thèse de doctorat de l’Université de Toulouse – INP Toulouse, 224p.

PAGES M., 2015. Effets et mécanismes d’action de l’ozone utilisé comme moyen de lutte contre des champignons pathogènes du pommier : études in vitro et in vivo. Thèse de doctorat de l’Université de Toulouse – INP Toulouse, 194p.

PIERRON R., 2015 Esca et vigne : Compréhension des mécanismes de défense précoces du bois de la vigne Vitis vinifera L. suite à la maladie, colonisation des champignons in planta et proposition de moyens de lutte pour une viticulture durable. Thèse de doctorat de l’Université de Toulouse – INP Toulouse, 233p